About the Cabbage Looper Database
This database provides access to the cabbage looper (Trichoplusia ni) genome assembly and annotation. 
Genome assemblies
The latest cabbage looper genome assembly (tn1) contains 1,031 scaffolds spanning 368.2 Mb. The scaffold N50 is 14.2 Mb, with >90% of the bases in 28 chromosome-length scaffolds. Contig N50 is 621.9 kb.
Annotation resource
The latest official gene set (OGS v1.0) is based on the tn1 genome assemnbly and contains 14,034 protein-coding genes.
Genomic variants called using sequencing data from Hi5 cells
piRNA clusters
Visualization
If you prefer loading the track hub yourself, it is available here
BLAST
Search T. ni nucleotides using a nucleotide query: blastn
Search translated T. ni nucleotides using a protein query: tblastn
Search translated T. ni nucleotides using a translated nucleotide query: tblastx
Raw data
This Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession NKQN00000000. Sequencing data are available through the NCBI Sequence Read Archive under the accession number PRJNA336361.
Related databases
Citation
Fu, Y., Yang, Y., Zhang, H., Farley, G., Wang, J., Quarles, K.A., Weng, Z., and Zamore, P.D. (2018). The genome of the Hi5 germ cell line from Trichoplusia ni, an agricultural pest and novel model for small RNA biology. ELife Sciences 7, e31628. 10.7554/eLife.31628
Contact us
Trichoplusia ni (Trichoplusia.ni {at} gmail.com)
Yu Fu (Yu.Fu {at} umassmed.edu)